Bioinformatics for Venom and Toxin Sciences
نویسندگان
چکیده
Venomous animals produce a myriad of important pharmacological components. The individual components, or venoms (toxins), are used in ion channel and receptor studies, drug discovery, and formulation of insecticides. The toxin data are scattered across public databases which provide sequence and structural descriptions, but very limited functional annotation. The exponential growth of newly identified toxin data has created a need for better data management. Venominformatics is a systematic bioinformatics approach in which classified, consolidated and cleaned venom data are stored into repositories and integrated with advanced bioinformatics tools for the analysis of structure and function of toxins. Venominformatics complements experimental studies and helps reduce the number of essential experiments.
منابع مشابه
Characterization of cDNA sequence encoding for a novel sodium channel -toxin from the Iranian scorpion Mesobuthus eupeus venom glands
The venoms of Buthidae scorpions are known to contain basic, single-chain protein -toxins consisting of 60-70 amino acid residues that are tightly cross-linked by four disulfide bridges. Total RNA was extracted from the venom glands of scorpion Mesobuthus eupeus collected from the Khuzestan province of Iran and then cDNA was synthesized with the modified oligo (dT) primer and extracted total R...
متن کاملBioinformatics-based design of novel antigenic B-cell linear epitopes of Deinagkistrodon acutus venom.
OBJECTIVE With the help of bioinformatics analysis, we wished to develop a novel antivenom against the Deinagkistrodon (D.) acutus snake venom using B-cell linear epitopes of three primary toxins (serine protease, metalloprotease, and phospholipase A2). MATERIALS AND METHODS cDNA sequences of three toxins of D. acutus venom were retrieved from the NCBI database. B-cell linear epitopes were pr...
متن کاملPrediction of Toxin Genes from Chinese Yellow Catfish Based on Transcriptomic and Proteomic Sequencing
Fish venom remains a virtually untapped resource. There are so few fish toxin sequences for reference, which increases the difficulty to study toxins from venomous fish and to develop efficient and fast methods to dig out toxin genes or proteins. Here, we utilized Chinese yellow catfish (Pelteobagrus fulvidraco) as our research object, since it is a representative species in Siluriformes with i...
متن کاملPrediction of Toxin-Antitoxin system (TA system) as a Novel Potent Target in Salmonella typhi Using Bioinformatics Analysis
Background and Objective: Salmonella typhi is one of the major challenges for the human and animal health. Salmonella with high pathogenicity can be harmful factor for human health. The control of this pathogen is a big challenge as it can cause serious infectious diseases such as gastroenteritis, septicemia and typhoid fever. On the other side, there are many factors such as toxin-antitoxin (T...
متن کاملComputational Studies of Snake Venom Toxins
Most snake venom toxins are proteins, and participate to envenomation through a diverse array of bioactivities, such as bleeding, inflammation, and pain, cytotoxic, cardiotoxic or neurotoxic effects. The venom of a single snake species contains hundreds of toxins, and the venoms of the 725 species of venomous snakes represent a large pool of potentially bioactive proteins. Despite considerable ...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
- Briefings in bioinformatics
دوره 4 1 شماره
صفحات -
تاریخ انتشار 2003